Entamoeba histolytica and E. dispar are genetically distinct but closely related protozoan species. Both colonize the human gut but only E. histolytica is able to invade tissues and cause disease. Comparison of the 2 species may help to elucidate the specific mechanisms involved in the pathogenicity of E. histolytica. During the last few years, various amoeba molecules considered to be important for pathogenic tissue invasion have been identified and characterized, such as a galactose-inhibitable surface lectin, pore-forming peptides and cysteine proteinases. This review summarizes present knowledge about the structure and function of these molecules, with emphasis on the differences between E. histolytica and E. dispar.