Sample optimization and identification of signal patterns of amino acid side chains in 2D RFDR spectra of the alpha-spectrin SH3 domain

J Magn Reson. 2000 Apr;143(2):411-6. doi: 10.1006/jmre.2000.2029.

Abstract

Future structural investigations of proteins by solid-state CPMAS NMR will rely on uniformly labeled protein samples showing spectra with an excellent resolution. NMR samples of the solid alpha-spectrin SH3 domain were generated in four different ways, and their (13)C CPMAS spectra were compared. The spectrum of a [u-(13)C, (15)N]-labeled sample generated by precipitation shows very narrow (13)C signals and resolved scalar carbon-carbon couplings. Linewidths of 16-19 Hz were found for the three alanine C(beta )signals of a selectively labeled [70% 3-(13)C]alanine-enriched SH3 sample. The signal pattern of the isoleucine, of all prolines, valines, alanines, and serines, and of three of the four threonines were identified in 2D (13)C-(13)C RFDR spectra of the [u-(13)C, (15)N]-labeled SH3 sample. A comparison of the (13)C chemical shifts of the found signal patterns with the (13)C assignment obtained in solution shows an intriguing match.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / chemistry
  • Amino Acids / chemistry*
  • Carbon Isotopes
  • Chemical Precipitation
  • Isoleucine / chemistry
  • Magnetic Resonance Spectroscopy / methods*
  • Nitrogen Isotopes
  • Proline / chemistry
  • Protein Conformation
  • Serine / chemistry
  • Spectrin / chemistry*
  • Threonine / chemistry
  • Valine / chemistry
  • src Homology Domains*

Substances

  • Amino Acids
  • Carbon Isotopes
  • Nitrogen Isotopes
  • Isoleucine
  • Spectrin
  • Threonine
  • Serine
  • Proline
  • Valine
  • Alanine