Detection of mutations in the COL4A5 gene by SSCP in X-linked Alport syndrome

Hum Mutat. 2001 Aug;18(2):141-8. doi: 10.1002/humu.1163.

Abstract

Alport syndrome is a progressive renal disease leading to chronic renal failure, which often is accompanied by sensorineural deafness and ophthalmological signs in the form of anterior lenticonus. The X-linked form of the disease is caused by mutations in the COL4A5 gene encoding the alpha5-chain of type IV-collagen. We performed mutation analysis of the COL4A5 gene by PCR-SSCP analysis of each of the 51 exons with flanking intronic sequences in 81 patients suspected of X-linked Alport syndrome including 29 clear X-linked cases, 37 cases from families with a pedigree compatible with X-linked inheritance, and 15 isolated cases. We found a mutation detection rate of 52% (42/81) (58% in males and 21% in females), and 69% (20/29) in families who clearly demonstrated X-linked inheritance. Thirty-six different mutations were found in 42 patients comprising 16 missense mutations, seven frameshifts, three in-frame deletions, four nonsense mutations, and six splice site mutations. Twenty-two of the mutations have not previously been reported. Furthermore, we found one non-pathogenic amino acid substitution, one rare variant in a non-coding region, and one polymorphism with a heterozygosity of 28%. Three de novo mutations were found, two of which were paternal and one of maternal origin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Codon, Nonsense / genetics
  • Collagen Type IV / genetics*
  • DNA Mutational Analysis
  • Exons / genetics
  • Female
  • Frameshift Mutation / genetics
  • Genetic Linkage / genetics
  • Genetic Testing
  • Genetic Variation / genetics
  • Heterozygote
  • Humans
  • Introns / genetics
  • Male
  • Molecular Sequence Data
  • Mutation / genetics*
  • Mutation, Missense / genetics
  • Nephritis, Hereditary / diagnosis
  • Nephritis, Hereditary / genetics*
  • Pedigree
  • Polymerase Chain Reaction
  • Polymorphism, Single-Stranded Conformational*
  • RNA Splice Sites / genetics
  • Sequence Deletion / genetics
  • X Chromosome / genetics

Substances

  • Codon, Nonsense
  • Collagen Type IV
  • RNA Splice Sites

Associated data

  • RefSeq/NM_000495