Genetic diversity and phylogenetic analysis of glycoprotein 5 of European-type porcine reproductive and respiratory virus strains in Spain

J Gen Virol. 2003 Mar;84(Pt 3):529-534. doi: 10.1099/vir.0.18478-0.

Abstract

The gene encoding glycoprotein 5 (ORF5) of 21 porcine reproductive and respiratory syndrome virus (PRRSV) isolates from Spain and two European-type vaccines currently available in that country were analysed using RT-PCR and sequencing. Sequences were then compared with other European-type sequences available through GenBank. Results showed percentages of similarity to Lelystad virus (LV), which, in most cases, were below 90 %. In contrast, two strains were very similar (>99 %) to a PRRSV variant from the Czech Republic. Evolutionary trees showed three types of strains: one grouped old Spanish sequences; a second grouped isolates from this study together with two Czech variant strains; and the third comprised other GenBank sequences. Regarding the predicted protein sequences, some isolates from this study showed a low degree of similarity to LV (below 50 %) and most of the strains examined had additional N-linked glycosylation sites compared to LV. These results provide evidence of the existence of variant PRRSV strains in Spain with characteristics that may be advantageous for immune evasion.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Binding Sites
  • Genetic Variation
  • Glycosylation
  • Molecular Sequence Data
  • Phylogeny*
  • Porcine Reproductive and Respiratory Syndrome
  • Porcine respiratory and reproductive syndrome virus / genetics*
  • Porcine respiratory and reproductive syndrome virus / immunology
  • Porcine respiratory and reproductive syndrome virus / isolation & purification
  • RNA, Viral / analysis*
  • Sequence Homology, Nucleic Acid
  • Spain
  • Swine / blood
  • Swine / virology*
  • Viral Envelope Proteins / genetics*
  • Viral Vaccines / genetics

Substances

  • RNA, Viral
  • Viral Envelope Proteins
  • Viral Vaccines
  • glycoprotein 5, PRRSV

Associated data

  • GENBANK/AF495499
  • GENBANK/AF495500
  • GENBANK/AF495501
  • GENBANK/AF495502
  • GENBANK/AF495503
  • GENBANK/AF495504
  • GENBANK/AF495505
  • GENBANK/AF495506
  • GENBANK/AF495507
  • GENBANK/AF495508
  • GENBANK/AF495509
  • GENBANK/AF495510
  • GENBANK/AF495511
  • GENBANK/AF495512
  • GENBANK/AF495513
  • GENBANK/AF495514
  • GENBANK/AF495515
  • GENBANK/AF495516
  • GENBANK/AF495517
  • GENBANK/AF495518
  • GENBANK/AF495519
  • GENBANK/AF495520
  • GENBANK/AF495521