RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

F Lazzarato; G Franceschinis; M Botta; F Cordero; R A Calogero

doi:10.1093/bioinformatics/bth287

RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

Bioinformatics. 2004 Nov 1;20(16):2848-50. doi: 10.1093/bioinformatics/bth287. Epub 2004 Apr 29.

Authors

F Lazzarato¹, G Franceschinis, M Botta, F Cordero, R A Calogero

Affiliation

¹ Department of Informatics, University of Piemonte Orientale Amedeo Avogadro, Spalto Marengo 33, Alessandria, Italy.

PMID: 15117758
DOI: 10.1093/bioinformatics/bth287

Abstract

RRE allows the extraction of non-coding regions surrounding a coding sequence [i.e. gene upstream region, 5'-untranslated region (5'-UTR), introns, 3'-UTR, downstream region] from annotated genomic datasets available at NCBI.

Availability: RRE parser and web-based interface are accessible at http://www.bioinformatica.unito.it/bioinformatics/rre/rre.html

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Chromosome Mapping / methods
Database Management Systems*
Databases, Nucleic Acid*
Documentation / methods
Information Storage and Retrieval / methods*
Sequence Alignment / methods*
Sequence Analysis, DNA / methods*
Software*
Untranslated Regions / genetics*

Substances

Untranslated Regions