The structure analysis and antigenicity study of the N protein of SARS-CoV

Genomics Proteomics Bioinformatics. 2003 May;1(2):145-54. doi: 10.1016/s1672-0229(03)01018-0.

Abstract

The Coronaviridae family is characterized by a nucleocapsid that is composed of the genome RNA molecule in combination with the nucleoprotein (N protein) within a virion. The most striking physiochemical feature of the N protein of SARS-CoV is that it is a typical basic protein with a high predicted pI and high hydrophilicity, which is consistent with its function of binding to the ribophosphate backbone of the RNA molecule. The predicted high extent of phosphorylation of the N protein on multiple candidate phosphorylation sites demonstrates that it would be related to important functions, such as RNA-binding and localization to the nucleolus of host cells. Subsequent study shows that there is an SR-rich region in the N protein and this region might be involved in the protein-protein interaction. The abundant antigenic sites predicted in the N protein, as well as experimental evidence with synthesized polypeptides, indicate that the N protein is one of the major antigens of the SARS-CoV. Compared with other viral structural proteins, the low variation rate of the N protein with regards to its size suggests its importance to the survival of the virus.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs / genetics
  • Amino Acid Sequence
  • Antigens, Viral / immunology*
  • Base Composition
  • Base Sequence
  • Cluster Analysis
  • Computational Biology
  • Coronavirus Nucleocapsid Proteins
  • DNA Primers
  • Enzyme-Linked Immunosorbent Assay
  • Genetic Variation*
  • Molecular Sequence Data
  • Nucleocapsid Proteins / genetics*
  • Nucleocapsid Proteins / immunology
  • Nucleocapsid Proteins / metabolism
  • Phosphorylation
  • Sequence Analysis, DNA
  • Severe acute respiratory syndrome-related coronavirus / genetics*

Substances

  • Antigens, Viral
  • Coronavirus Nucleocapsid Proteins
  • DNA Primers
  • Nucleocapsid Proteins