The GB1 amyloid fibril: recruitment of the peripheral beta-strands of the domain swapped dimer into the polymeric interface

J Mol Biol. 2005 May 6;348(3):687-98. doi: 10.1016/j.jmb.2005.02.071.

Abstract

Three-dimensional domain swapping has been evoked as a mechanism for oligomerization of proteins. Here, we show for the immunoglobulin-binding domain B1 of streptococcal protein G (GB1) that fibril formation is observed readily for variants that exist as domain-swapped dimers. No fibril was formed by a revertant that exhibits the stable wild-type GB1 fold or a mutant comprising a highly destabilized, fluctuating ensemble of conformers. Structural features of the GB1 amyloid fibril were characterized by cysteine disulfide cross-linking. Residues in the outer edge beta-strands of the domain-swapped dimer readily form intermolecular disulfide bonds prior to and during fibril formation. On the basis of these data, a structural model for the assembly of domain-swapped dimers into a polymeric structure of the GB1 fibril is proposed.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amyloid / chemistry*
  • Amyloid / genetics
  • Amyloid / metabolism
  • Amyloid / ultrastructure
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Bacterial Proteins / ultrastructure
  • Cysteine / chemistry
  • Cysteine / metabolism
  • Dimerization
  • Disulfides / chemistry
  • Models, Molecular
  • Molecular Sequence Data
  • Oxidation-Reduction
  • Protein Structure, Quaternary*
  • Protein Structure, Secondary

Substances

  • Amyloid
  • Bacterial Proteins
  • Disulfides
  • IgG Fc-binding protein, Streptococcus
  • Cysteine