Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry

Proc Natl Acad Sci U S A. 2005 May 17;102(20):7163-8. doi: 10.1073/pnas.0502164102. Epub 2005 May 6.

Abstract

Gene product (gp) 24 of bacteriophage T4 forms the pentameric vertices of the capsid. Using x-ray crystallography, we found the principal domain of gp24 to have a polypeptide fold similar to that of the HK97 phage capsid protein plus an additional insertion domain. Fitting gp24 monomers into a cryo-EM density map of the mature T4 capsid suggests that the insertion domain interacts with a neighboring subunit, effecting a stabilization analogous to the covalent crosslinking in the HK97 capsid. Sequence alignment and genetic data show that the folds of gp24 and the hexamer-forming capsid protein, gp23*, are similar. Accordingly, models of gp24* pentamers, gp23* hexamers, and the whole capsid were built, based on a cryo-EM image reconstruction of the capsid. Mutations in gene 23 that affect capsid shape map to the capsomer's periphery, whereas mutations that allow gp23 to substitute for gp24 at the vertices modify the interactions between monomers within capsomers. Structural data show that capsid proteins of most tailed phages, and some eukaryotic viruses, may have evolved from a common ancestor.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Capsid Proteins / chemistry
  • Capsid Proteins / genetics*
  • Cloning, Molecular
  • Coliphages / metabolism*
  • Crystallography, X-Ray
  • Evolution, Molecular*
  • Models, Molecular*
  • Molecular Sequence Data
  • Mutation / genetics
  • Protein Structure, Tertiary
  • Sequence Alignment

Substances

  • Capsid Proteins
  • gene 24 protein, Enterobacteria phage T4

Associated data

  • PDB/1YUE
  • PDB/1Z1U