Gene identification in the oomycete pathogen Phytophthora parasitica during in vitro vegetative growth through expressed sequence tags

Fungal Genet Biol. 2005 Jul;42(7):611-23. doi: 10.1016/j.fgb.2005.03.002. Epub 2005 Apr 7.

Abstract

Phytophthora parasitica is a soilborne oomycete pathogen capable of infecting a wide range of plants, including many solanaceous plants. In a first step towards large-scale gene discovery, we generated expressed sequence tags (ESTs) from a cDNA library constructed using mycelium grown in synthetic medium. A total of 3568 ESTs were assembled into 2269 contiguous sequences. Functional categorization could be performed for 65.45% of ESTs. A significant portion of the transcripts encodes proteins of common metabolic pathways. The most prominent sequences correspond to members of the elicitin family, and enzymes involved in the lipid metabolism. A number of genes potentially involved in pathogenesis were also identified, which may constitute virulence determinants.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Expressed Sequence Tags / metabolism*
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism*
  • Gene Library
  • Genes, Fungal*
  • Molecular Sequence Data
  • Mycelium / genetics
  • Mycelium / growth & development
  • Mycelium / pathogenicity
  • Phylogeny
  • Phytophthora / genetics*
  • Phytophthora / growth & development*
  • Phytophthora / pathogenicity
  • Proteome*
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Transcription, Genetic

Substances

  • Fungal Proteins
  • Proteome

Associated data

  • GENBANK/AAK01624
  • GENBANK/AAK01625