Definition of a new information-based per-residue quality parameter

J Biomol NMR. 2005 Oct;33(2):123-34. doi: 10.1007/s10858-005-2826-5.

Abstract

For biomolecular NMR structures typically only a poor correspondence is observed between statistics derived from the experimental input data and structural quality indicators obtained from the structure ensembles. Here, we investigate the relationship between the amount of available NMR data and structure quality. By generating datasets with a predetermined information content and evaluating the quality of the resulting structure ensembles we show that there is, in contrast to previous findings, a linear relation between the information contained in experimental data and structural quality. From this relation, a new quality parameter is derived that provides direct insight, on a per-residue basis, into the extent to which structural quality is governed by the experimental input data.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Humans
  • Nuclear Magnetic Resonance, Biomolecular*
  • Peptides / chemistry*
  • Protein Structure, Tertiary
  • Proteins / chemistry*

Substances

  • Peptides
  • Proteins