Sequence and transcriptional activity of the Escherichia coli K-12 chromosome region between rrnC and ilvGMEDA

Gene. 1991 Jan 2;97(1):21-7. doi: 10.1016/0378-1119(91)90005-v.

Abstract

We previously identified a protein related to the expression of the ilvGMEDA cluster of Escherichia coli K-12. It was observed that this ilv-related protein was produced at higher levels in UV irradiated cells infected with lambda dilvGMEDA phage with specific ilvG mutations (ValR), compared to phage carrying the wild-type(ValS) ilvG allele. The gene encoding this protein was further localized to a region between rrnC and ilvGMEDA by analyzing restriction fragment subsets in maxicells. We have now determined the nucleotide (nt) sequence of the 3.5-kb segment between rrnC and ilvGMEDA, and two open reading frames (ORFs) are present in the region expected to contain the ilv-related gene. These ORFs predicts Mrs of 18,751 (ORFI) and 20,085 (ORFII) Da, and both ORFs have a strong probability to encode proteins based on codon frequency analysis. Maxicell analysis revealed that a 1319-bp HindIII-SmaI fragment containing ORFI encodes the ilv-related peptide. We deleted a ClaI fragment that removed a portion of ORFI encoding the C-terminal region of the peptide, and maxicell analysis revealed a decrease in the size of the protein produced in accord with the prediction. RNA slot blots and Northern blots were used to characterize transcripts encoding ORFI. A transcript initiated 112 nt from the ilvGp2 promoter, but proceeding in the opposite direction, may encode the ORFI peptide.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / genetics*
  • Base Sequence
  • Blotting, Northern
  • Chromosome Mapping
  • Chromosomes, Bacterial
  • Codon
  • Escherichia coli / genetics*
  • Escherichia coli Proteins*
  • Isoleucine / biosynthesis
  • Molecular Sequence Data
  • Open Reading Frames*
  • Restriction Mapping
  • Transcription, Genetic*
  • Valine / biosynthesis

Substances

  • Bacterial Proteins
  • Codon
  • Escherichia coli Proteins
  • Isoleucine
  • Valine

Associated data

  • GENBANK/M37337
  • GENBANK/S73252
  • GENBANK/S75861
  • GENBANK/S75864
  • GENBANK/S75866
  • GENBANK/S75868
  • GENBANK/S75872
  • GENBANK/S75874
  • GENBANK/S75876
  • GENBANK/S75878