RNA helicase p68 (DDX5) regulates tau exon 10 splicing by modulating a stem-loop structure at the 5' splice site

Mol Cell Biol. 2011 May;31(9):1812-21. doi: 10.1128/MCB.01149-10. Epub 2011 Feb 22.

Abstract

Regulation of tau exon 10 splicing plays an important role in tauopathy. One of the cis elements regulating tau alternative splicing is a stem-loop structure at the 5' splice site of tau exon 10. The RNA helicase(s) modulating this stem-loop structure was unknown. We searched for splicing regulators interacting with this stem-loop region using an RNA affinity pulldown-coupled mass spectrometry approach and identified DDX5/RNA helicase p68 as an activator of tau exon 10 splicing. The activity of p68 in stimulating tau exon 10 inclusion is dependent on RBM4, an intronic splicing activator. RNase H cleavage and U1 protection assays suggest that p68 promotes conformational change of the stem-loop structure, thereby increasing the access of U1snRNP to the 5' splice site of tau exon 10. This study reports the first RNA helicase interacting with a stem-loop structure at the splice site and regulating alternative splicing in a helicase-dependent manner. Our work uncovers a previously unknown function of p68 in regulating tau exon 10 splicing. Furthermore, our experiments reveal functional interaction between two splicing activators for tau exon 10, p68 binding at the stem-loop region and RBM4 interacting with the intronic splicing enhancer region.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Cell Line
  • DEAD-box RNA Helicases / metabolism*
  • Exons*
  • Humans
  • Nucleic Acid Conformation
  • RNA Splicing*
  • RNA-Binding Proteins / metabolism
  • Ribonucleoproteins, Small Nuclear / metabolism
  • tau Proteins / genetics*

Substances

  • RBM4 protein, human
  • RNA-Binding Proteins
  • Ribonucleoproteins, Small Nuclear
  • SNRNP35 protein, human
  • tau Proteins
  • Ddx5 protein, human
  • DEAD-box RNA Helicases