Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community

Sci Rep. 2014 Jun 13:4:5288. doi: 10.1038/srep05288.

Abstract

Reaching a comprehensive understanding of how nature solves the problem of degrading recalcitrant biomass may eventually allow development of more efficient biorefining processes. Here we interpret genomic and proteomic information generated from a cellulolytic microbial consortium (termed F1RT) enriched from soil. Analyses of reconstructed bacterial draft genomes from all seven uncultured phylotypes in F1RT indicate that its constituent microbes cooperate in both cellulose-degrading and other important metabolic processes. Support for cellulolytic inter-species cooperation came from the discovery of F1RT microbes that encode and express complimentary enzymatic inventories that include both extracellular cellulosomes and secreted free-enzyme systems. Metabolic reconstruction of the seven F1RT phylotypes predicted a wider genomic rationale as to how this particular community functions as well as possible reasons as to why biomass conversion in nature relies on a structured and cooperative microbial community.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / metabolism
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biomass
  • Cellulose / metabolism*
  • Cellulosomes / genetics
  • Cellulosomes / metabolism
  • Cluster Analysis
  • Genomics / methods*
  • Microbial Consortia*
  • Phylogeny
  • Proteomics / methods*
  • RNA, Ribosomal, 16S / genetics
  • Soil Microbiology*

Substances

  • Bacterial Proteins
  • RNA, Ribosomal, 16S
  • Cellulose