CRISPR-Cas9 genome editing of a single regulatory element nearly abolishes target gene expression in mice--brief report

Arterioscler Thromb Vasc Biol. 2015 Feb;35(2):312-5. doi: 10.1161/ATVBAHA.114.305017. Epub 2014 Dec 23.

Abstract

Objective: To ascertain the importance of a single regulatory element in the control of Cnn1 expression using CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9) genome editing.

Approach and results: The CRISPR/Cas9 system was used to produce 3 of 18 founder mice carrying point mutations in an intronic CArG box of the smooth muscle cell-restricted Cnn1 gene. Each founder was bred for germline transmission of the mutant CArG box and littermate interbreeding to generate homozygous mutant (Cnn1(ΔCArG/ΔCArG)) mice. Quantitative reverse transcription polymerase chain reaction, Western blotting, and confocal immunofluorescence microscopy showed dramatic reductions in Cnn1 mRNA and CNN1 protein expression in Cnn1(ΔCArG/ΔCArG) mice with no change in other smooth muscle cell-restricted genes and little evidence of off-target edits elsewhere in the genome. In vivo chromatin immunoprecipitation assay revealed a sharp decrease in binding of serum response factor to the mutant CArG box. Loss of CNN1 expression was coincident with an increase in Ki-67 positive cells in the normal vessel wall.

Conclusions: CRISPR/Cas9 genome editing of a single CArG box nearly abolishes Cnn1 expression in vivo and evokes increases in smooth muscle cell DNA synthesis. This facile genome editing system paves the way for a new generation of studies designed to test the importance of individual regulatory elements in living animals, including regulatory variants in conserved sequence blocks linked to human disease.

Keywords: CArG box; CRISPR; mice, transgenic; muscle, smooth; serum response factor.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • CRISPR-Cas Systems / genetics*
  • Calcium-Binding Proteins / genetics*
  • Calcium-Binding Proteins / metabolism
  • Calponins
  • Cell Proliferation
  • Down-Regulation
  • Homozygote
  • Introns
  • Ki-67 Antigen / metabolism
  • Mice, Inbred C57BL
  • Mice, Transgenic
  • Microfilament Proteins / genetics*
  • Microfilament Proteins / metabolism
  • Myocytes, Smooth Muscle / metabolism
  • Myocytes, Smooth Muscle / pathology
  • Phenotype
  • Point Mutation*
  • RNA, Messenger / metabolism
  • Regulatory Elements, Transcriptional / genetics*

Substances

  • Calcium-Binding Proteins
  • Ki-67 Antigen
  • Microfilament Proteins
  • RNA, Messenger