Quantification of EVI1 transcript levels in acute myeloid leukemia by RT-qPCR analysis: A study by the ALFA Group

Leuk Res. 2015 Dec;39(12):1443-7. doi: 10.1016/j.leukres.2015.09.021. Epub 2015 Oct 9.

Abstract

EVI1 overexpression confers poor prognosis in acute myeloid leukemia (AML). Quantification of EVI1 expression has been mainly assessed by real-time quantitative PCR (RT-qPCR) based on relative quantification of EVI1-1D splice variant. In this study, we developed a RT-qPCR assay to perform quantification of EVI1 expression covering the different splice variants. A sequence localized in EVI1 exons 14 and 15 was cloned into plasmids that were used to establish RT-qPCR standard curves. Threshold values to define EVI1 overexpression were determined using 17 bone marrow (BM) and 31 peripheral blood (PB) control samples and were set at 1% in BM and 0.5% in PB. Samples from 64 AML patients overexpressing EVI1 included in the ALFA-0701 or -0702 trials were collected at diagnosis and during follow-up (n=152). Median EVI1 expression at AML diagnosis was 23.3% in BM and 3.6% in PB. EVI1 expression levels significantly decreased between diagnostic and post-induction samples, with an average variation from 21.6% to 3.56% in BM and from 4.0% to 0.22% in PB, but did not exceed 1 log10 reduction. Our study demonstrates that the magnitude of reduction in EVI1 expression levels between AML diagnosis and follow-up is not sufficient to allow sensitive detection of minimal residual disease.

Keywords: Acute myeloid leukemia; EVI1 overexpression; MLL; RT-qPCR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Blood Cells / metabolism
  • Bone Marrow Cells / metabolism
  • DNA-Binding Proteins / biosynthesis*
  • DNA-Binding Proteins / blood
  • DNA-Binding Proteins / genetics
  • Female
  • Follow-Up Studies
  • Gene Expression Regulation, Leukemic*
  • Humans
  • Leukemia, Myeloid, Acute / diagnosis
  • Leukemia, Myeloid, Acute / genetics
  • Leukemia, Myeloid, Acute / metabolism
  • Leukemia, Myeloid, Acute / pathology*
  • MDS1 and EVI1 Complex Locus Protein
  • Male
  • Middle Aged
  • Multicenter Studies as Topic
  • Neoplasm Proteins / biosynthesis*
  • Neoplasm Proteins / blood
  • Neoplasm Proteins / genetics
  • Neoplasm, Residual
  • Proto-Oncogenes / genetics
  • RNA, Messenger / biosynthesis*
  • RNA, Messenger / blood
  • RNA, Neoplasm / biosynthesis*
  • RNA, Neoplasm / blood
  • Randomized Controlled Trials as Topic
  • Real-Time Polymerase Chain Reaction / methods*
  • Sensitivity and Specificity
  • Transcription Factors / biosynthesis*
  • Transcription Factors / blood
  • Transcription Factors / genetics
  • Transcription, Genetic
  • Young Adult

Substances

  • DNA-Binding Proteins
  • MDS1 and EVI1 Complex Locus Protein
  • MECOM protein, human
  • Neoplasm Proteins
  • RNA, Messenger
  • RNA, Neoplasm
  • Transcription Factors