Direct inhibition of oncogenic KRAS by Bacillus pumilus ribonuclease (binase)

Biochim Biophys Acta. 2016 Jul;1863(7 Pt A):1559-67. doi: 10.1016/j.bbamcr.2016.04.005. Epub 2016 Apr 8.

Abstract

RAS proteins function as molecular switches that transmit signals from cell surface receptors into specific cellular responses via activation of defined signaling pathways (Fang, 2015). Aberrant constitutive RAS activation occurs with high incidence in different types of cancer (Bos, 1989). Thus, inhibition of RAS-mediated signaling is extremely important for therapeutic approaches against cancer. Here we showed that the ribonuclease (RNase) binase, directly interacts with endogenous KRAS. Further, molecular structure models suggested an inhibitory nature of binase-RAS interaction involving regions of RAS that are important for different aspects of its function. Consistent with these models, phosphorylation analysis of effectors of RAS-mediated signaling revealed that binase inhibits the MAPK/ERK signaling pathway. Interestingly, RAS activation assays using a non-hydrolysable GTP analog (GTPγS) demonstrated that binase interferes with the exchange of GDP by GTP. Furthermore, we showed that binase reduced the interaction of RAS with the guanine nucleotide exchange factor (GEF), SOS1. Our data support a model in which binase-KRAS interaction interferes with the function of GEFs and stabilizes the inactive GDP-bound conformation of RAS thereby inhibiting MAPK/ERK signaling. This model plausibly explains the previously reported, antitumor-effect of binase specific towards RAS-transformed cells and suggests the development of anticancer therapies based on this ribonuclease.

Keywords: GAP; GEF; Guanyl-preferring RNase; KRAS; MAPK/ERK pathway; small G-proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Cell Movement
  • Cell Transformation, Neoplastic / genetics
  • Cell Transformation, Neoplastic / metabolism*
  • Cell Transformation, Neoplastic / pathology
  • Endoribonucleases / chemistry
  • Endoribonucleases / metabolism*
  • Enzyme Stability
  • Extracellular Signal-Regulated MAP Kinases / metabolism
  • Guanosine Triphosphate / metabolism
  • Hydrolysis
  • Mice
  • Models, Molecular
  • Phosphorylation
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Proto-Oncogene Proteins p21(ras) / chemistry
  • Proto-Oncogene Proteins p21(ras) / genetics
  • Proto-Oncogene Proteins p21(ras) / metabolism*
  • SOS1 Protein / metabolism
  • Signal Transduction
  • Structure-Activity Relationship
  • Time Factors
  • Transfection

Substances

  • SOS1 Protein
  • Guanosine Triphosphate
  • Extracellular Signal-Regulated MAP Kinases
  • Endoribonucleases
  • ribonuclease T(2)
  • Hras protein, mouse
  • Proto-Oncogene Proteins p21(ras)