RNA-binding protein CPEB1 remodels host and viral RNA landscapes

Nat Struct Mol Biol. 2016 Dec;23(12):1101-1110. doi: 10.1038/nsmb.3310. Epub 2016 Oct 24.

Abstract

Host and virus interactions occurring at the post-transcriptional level are critical for infection but remain poorly understood. Here, we performed comprehensive transcriptome-wide analyses revealing that human cytomegalovirus (HCMV) infection results in widespread alternative splicing (AS), shortening of 3' untranslated regions (3' UTRs) and lengthening of poly(A)-tails in host gene transcripts. We found that the host RNA-binding protein CPEB1 was highly induced after infection, and ectopic expression of CPEB1 in noninfected cells recapitulated infection-related post-transcriptional changes. CPEB1 was also required for poly(A)-tail lengthening of viral RNAs important for productive infection. Strikingly, depletion of CPEB1 reversed infection-related cytopathology and post-transcriptional changes, and decreased productive HCMV titers. Host RNA processing was also altered in herpes simplex virus-2 (HSV-2)-infected cells, thereby indicating that this phenomenon might be a common occurrence during herpesvirus infections. We anticipate that our work may serve as a starting point for therapeutic targeting of host RNA-binding proteins in herpesvirus infections.

MeSH terms

  • 3' Untranslated Regions
  • Alternative Splicing
  • Cell Line
  • Cytomegalovirus / genetics*
  • Cytomegalovirus / physiology
  • Cytomegalovirus Infections / genetics*
  • Cytomegalovirus Infections / metabolism
  • Cytomegalovirus Infections / pathology
  • Cytomegalovirus Infections / virology
  • Gene Expression Regulation
  • Host-Pathogen Interactions
  • Humans
  • Polyadenylation
  • RNA, Messenger / genetics*
  • RNA, Viral / genetics*
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism
  • Transcriptome*
  • Up-Regulation
  • mRNA Cleavage and Polyadenylation Factors / genetics*
  • mRNA Cleavage and Polyadenylation Factors / metabolism

Substances

  • 3' Untranslated Regions
  • CPEB1 protein, human
  • RNA, Messenger
  • RNA, Viral
  • Transcription Factors
  • mRNA Cleavage and Polyadenylation Factors