New Amino-Acid-Based β-Phosphorylated Nitroxides for Probing Acidic pH in Biological Systems by EPR Spectroscopy

Chembiochem. 2017 Feb 1;18(3):300-315. doi: 10.1002/cbic.201600550. Epub 2016 Dec 16.

Abstract

There is increasing interest in measuring pH in biological samples by using nitroxides with pH-dependent electron paramagnetic resonance (EPR) spectra. Aiming to improve the spectral sensitivity (ΔaX ) of these probes (i.e., the difference between the EPR hyperfine splitting (hfs) in their protonated and unprotonated forms), we characterized a series of novel linear α-carboxy, α'-diethoxyphosphoryl nitroxides constructed on an amino acid core and featuring an (α or α')-C-H bond. In buffer, the three main hfs (aN , aH , and aP ) of their EPR spectra vary reversibly with pH and, from aP or aH titration curves, a two- to fourfold increase in sensitivity was achieved compared to reference imidazoline or imidazolidine nitroxides. The crystallized carboxylate 10 b (pKa ≈3.6), which demonstrated low cytotoxicity and good resistance to bioreduction, was applied to probe stomach acidity in rats. The results pave the way to a novel generation of highly sensitive EPR pH markers.

Keywords: EPR spectroscopy; molecular dynamics; nitroxide; sensors; stomach acidity.

MeSH terms

  • A549 Cells
  • Amino Acids / chemistry*
  • Animals
  • Cell Survival / drug effects
  • Crystallography, X-Ray
  • Electron Spin Resonance Spectroscopy*
  • Gastric Acid / chemistry
  • Gastric Mucosa / metabolism
  • Humans
  • Hydrogen-Ion Concentration
  • Magnetic Resonance Spectroscopy
  • Male
  • Molecular Dynamics Simulation
  • Nitrogen Oxides / chemistry*
  • Nitrogen Oxides / toxicity
  • Organophosphonates / chemical synthesis
  • Organophosphonates / chemistry*
  • Phosphorylation
  • Rats
  • Rats, Sprague-Dawley

Substances

  • Amino Acids
  • Nitrogen Oxides
  • Organophosphonates