7-Carboxy-7-deazaguanine Synthase: A Radical S-Adenosyl-l-methionine Enzyme with Polar Tendencies

J Am Chem Soc. 2017 Feb 8;139(5):1912-1920. doi: 10.1021/jacs.6b11381. Epub 2017 Jan 25.

Abstract

Radical S-adenosyl-l-methionine (SAM) enzymes are widely distributed and catalyze diverse reactions. SAM binds to the unique iron atom of a site-differentiated [4Fe-4S] cluster and is reductively cleaved to generate a 5'-deoxyadenosyl radical, which initiates turnover. 7-Carboxy-7-deazaguanine (CDG) synthase (QueE) catalyzes a key step in the biosynthesis of 7-deazapurine containing natural products. 6-Carboxypterin (6-CP), an oxidized analogue of the natural substrate 6-carboxy-5,6,7,8-tetrahydropterin (CPH4), is shown to be an alternate substrate for CDG synthase. Under reducing conditions that would promote the reductive cleavage of SAM, 6-CP is turned over to 6-deoxyadenosylpterin (6-dAP), presumably by radical addition of the 5'-deoxyadenosine followed by oxidative decarboxylation to the product. By contrast, in the absence of the strong reductant, dithionite, the carboxylate of 6-CP is esterified to generate 6-carboxypterin-5'-deoxyadenosyl ester (6-CP-dAdo ester). Structural studies with 6-CP and SAM also reveal electron density consistent with the ester product being formed in crystallo. The differential reactivity of 6-CP under reducing and nonreducing conditions highlights the ability of radical SAM enzymes to carry out both polar and radical transformations in the same active site.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Biocatalysis
  • Biological Products / chemistry
  • Biological Products / metabolism*
  • Carbon-Nitrogen Lyases / chemistry
  • Carbon-Nitrogen Lyases / metabolism*
  • Crystallography, X-Ray
  • Free Radicals / chemistry
  • Free Radicals / metabolism
  • Models, Molecular
  • Molecular Structure
  • Purines / biosynthesis*
  • Purines / chemistry
  • S-Adenosylmethionine / chemistry
  • S-Adenosylmethionine / metabolism*

Substances

  • 7-deazapurine
  • Bacterial Proteins
  • Biological Products
  • Free Radicals
  • Purines
  • S-Adenosylmethionine
  • Carbon-Nitrogen Lyases
  • 7-carboxy-7-deazaguanine synthase, Burkholderia multivorans