An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states

Nat Commun. 2017 May 18:8:15428. doi: 10.1038/ncomms15428.

Abstract

Macromolecular crowding ought to stabilize folded forms of proteins, through an excluded volume effect. This explanation has been questioned and observed effects attributed to weak interactions with other cell components. Here we show conclusively that protein stability is affected by volume exclusion and that the effect is more pronounced when the crowder's size is closer to that of the protein under study. Accurate evaluation of the volume exclusion effect is made possible by the choice of yeast frataxin, a protein that undergoes cold denaturation above zero degrees, because the unfolded form at low temperature is more expanded than the corresponding one at high temperature. To achieve optimum sensitivity to changes in stability we introduce an empirical parameter derived from the stability curve. The large effect of PEG 20 on cold denaturation can be explained by a change in water activity, according to Privalov's interpretation of cold denaturation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cloning, Molecular
  • Cold Temperature
  • Dextrans / chemistry*
  • Dextrans / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Ficoll / chemistry*
  • Ficoll / metabolism
  • Frataxin
  • Gene Expression
  • Hot Temperature
  • Iron-Binding Proteins / chemistry*
  • Iron-Binding Proteins / genetics
  • Iron-Binding Proteins / metabolism
  • Polyethylene Glycols / chemistry*
  • Polyethylene Glycols / metabolism
  • Protein Denaturation
  • Protein Folding
  • Protein Stability
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Saccharomyces cerevisiae
  • Thermodynamics
  • Water / chemistry
  • Water / metabolism

Substances

  • Dextrans
  • Iron-Binding Proteins
  • Recombinant Proteins
  • Water
  • Ficoll
  • Polyethylene Glycols