High-efficiency cloning of DNA sequences complementary to mouse neuroblastoma polyadenylated RNA

J Neurogenet. 1985 Nov;2(5):345-63. doi: 10.3109/01677068509102328.

Abstract

A cDNA library was efficiently synthesized from mouse neuroblastoma poly(A)+RNA. Several modifications of the oligo(dC)(dG) tailing procedure were used. After first strand synthesis, a dATP tail was added to the 3'-end of the cDNA. The second strand was primed for synthesis with oligo(dT). Blunt ends were produced on the cDNA by treatment with S1 nuclease. Size-enriched fractions of high molecular weight DNAs were obtained by passing the cDNA over a Sepharose CL-4B column. The optimal tailing time for each cDNA fraction was individually tested. Tailing reactions used terminal deoxynucleotidyl transferase and annealing reactions used a (G)-tailed Pst I cut pBR322. E. coli K12 RR1 cells were transformed and 2.5-5 X 10(6) transformants per microgram cDNA insert were obtained for each size fraction. The transformants had an average insert size of 1200 base pairs and were 98% ampicillin sensitive. Our modifications in the method for cDNA library synthesis had 3 advantages. (1) Homopolymer-primed cDNA treated with S1 nuclease allowed the blunt ends to be tailed synchronously. This allowed a higher transformation efficiency without loss of 5'-sequences. (2) Time tailing determined the most efficient tail length and optimized the transformation efficiency in each size fraction. (3) A Sephadex G-50 mini-column was used to desalt and dry nitrogen was used to concentrate the ds cDNA instead of the usual ethanol precipitation. This resulted in almost 100% recovery of synthesized products at each step of this procedure.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Composition
  • Cell Line
  • Cloning, Molecular* / methods
  • DNA / genetics*
  • DNA, Recombinant
  • DNA, Single-Stranded / genetics
  • Endonucleases / metabolism
  • Escherichia coli / genetics
  • Mice
  • Molecular Weight
  • Neuroblastoma / genetics*
  • Poly A / genetics*
  • RNA, Messenger / genetics*
  • Single-Strand Specific DNA and RNA Endonucleases
  • Transcription, Genetic

Substances

  • DNA, Recombinant
  • DNA, Single-Stranded
  • RNA, Messenger
  • Poly A
  • DNA
  • Endonucleases
  • Single-Strand Specific DNA and RNA Endonucleases