Statistical models discriminating between complex samples measured with microfluidic receptor-cell arrays

PLoS One. 2019 Apr 8;14(4):e0214878. doi: 10.1371/journal.pone.0214878. eCollection 2019.

Abstract

Data analysis for flow-based in-vitro receptomics array, like a tongue-on-a-chip, is complicated by the relatively large variability within and between arrays, transfected DNA types, spots, and cells within spots. Simply averaging responses of spots of the same type would lead to high variances and low statistical power. This paper presents an approach based on linear mixed models, allowing a quantitative and robust comparison of complex samples and indicating which receptors are responsible for any differences. These models are easily extended to take into account additional effects such as the build-up of cell stress and to combine data from replicated experiments. The increased analytical power this brings to receptomics research is discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biosensing Techniques / statistics & numerical data
  • Humans
  • Lab-On-A-Chip Devices / statistics & numerical data*
  • Linear Models
  • Microfluidic Analytical Techniques / statistics & numerical data*
  • Models, Statistical
  • Receptors, G-Protein-Coupled / genetics
  • Receptors, G-Protein-Coupled / metabolism*
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Taste Buds / metabolism

Substances

  • Receptors, G-Protein-Coupled
  • Recombinant Proteins

Grants and funding

This work was supported by grant numbers Topsector Horticulture & Propagation materials KV 1409-025 (received by MAJ). The URL to sponsors’ website is https://topsectortu.nl/nl/high-throughput-phenotyping-tomato-flavour. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.