Rat Genome Databases, Repositories, and Tools

Stanley J F Laulederkind; G Thomas Hayman; Shur-Jen Wang; Matthew J Hoffman; Jennifer R Smith; Elizabeth R Bolton; Jeff De Pons; Marek A Tutaj; Monika Tutaj; Jyothi Thota; Melinda R Dwinell; Mary Shimoyama

doi:10.1007/978-1-4939-9581-3_3

Rat Genome Databases, Repositories, and Tools

Methods Mol Biol. 2019:2018:71-96. doi: 10.1007/978-1-4939-9581-3_3.

Authors

Affiliations

¹ Department of Biomedical Engineering, Rat Genome Database, Medical College of Wisconsin, Milwaukee, WI, USA. slaulede@mcw.edu.
² Department of Biomedical Engineering, Rat Genome Database, Medical College of Wisconsin, Milwaukee, WI, USA.
³ Genomic Sciences and Precision Medicine Center, Medical College of Wisconsin, Milwaukee, WI, USA.
⁴ Department of Physiology, Rat Genome Database, Medical College of Wisconsin, Milwaukee, WI, USA.

PMID: 31228152
DOI: 10.1007/978-1-4939-9581-3_3

Abstract

Resources for rat researchers are extensive, including strain repositories and databases all around the world. The Rat Genome Database (RGD) serves as the primary rat data repository, providing both manual and computationally collected data from other databases.

Keywords: Analysis; Annotation; Database; Disease; Gene; Genomics; Model organism; Pathway; Phenotype; Visualization.

Publication types

Research Support, N.I.H., Extramural

MeSH terms

Animals
Biomedical Research
Databases, Factual*
Genome*
Models, Animal*
Molecular Sequence Annotation
Phenotype
Quantitative Trait Loci
Rats

Grants and funding

R01 HL064541/HL/NHLBI NIH HHS/United States