Salmonella enterica mcr-1 Positive from Food in Brazil: Detection and Characterization

Foodborne Pathog Dis. 2020 Mar;17(3):202-208. doi: 10.1089/fpd.2019.2700. Epub 2019 Sep 26.

Abstract

The mcr-1 gene has been identified in bacterial isolates obtained from humans, animals, environment, and food, including Salmonella spp., which is one of the major foodborne pathogens worldwide. The aim of this study was to evaluate the presence of mcr-1 gene in Salmonella spp. from food produced in Brazil and to characterize the isolates harboring this gene. A total of 490 Salmonella spp. isolates from the Brazilian National Program for the Control of Foodborne Pathogens were screened for the presence of mcr-1 gene by polymerase chain reaction (PCR). Whole genome sequencing (WGS) was performed in positive isolates to characterize the sequence type (ST), plasmid families and resistance genes. Antimicrobial susceptibility tests were performed by broth microdilution. Selected isolates were submitted to conjugation experiments using the Escherichia coli J53 as a receptor. We detected eight isolates harboring the mcr-1 gene; seven belonged to Salmonella enterica serovar Typhimurium and its monophasic variant 4,[5],12:i:-, and one belonged to serovar Saintpaul. Seven of the mcr-1 positive isolates displayed a high rate of resistance to other antibiotics in addition to colistin. Analysis of the WGS indicated that the ST 19 was the most common ST among the mcr-1 positive isolates. The mcr-1 gene was located in an IncX4 plasmid of ∼33 kb, with no additional resistance genes and with high identity with a plasmid obtained from a clinical isolate of E. coli mcr-1 positive in Brazil. All plasmids harboring the mcr-1 gene were able to conjugate. Our results suggest the spread of a single plasmid type in Brazil harboring the mcr-1 among Salmonella spp. The horizontal transfer of this mobile element has been contributing to the spread of the colistin resistance in the country.

Keywords: Salmonella; mcr-1; polymyxin resistance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Brazil / epidemiology
  • Conjugation, Genetic
  • DNA, Bacterial
  • Drug Resistance, Bacterial
  • Escherichia coli / genetics
  • Food Contamination*
  • Food Microbiology* / methods
  • Genes, Bacterial
  • Interspersed Repetitive Sequences*
  • Microbial Sensitivity Tests
  • Phylogeny
  • Polymerase Chain Reaction
  • Pork Meat / microbiology
  • Poultry / microbiology
  • Salmonella enterica / classification*
  • Salmonella enterica / drug effects*
  • Salmonella enterica / isolation & purification
  • Salmonella typhimurium / classification
  • Salmonella typhimurium / drug effects
  • Salmonella typhimurium / isolation & purification
  • Turkeys / microbiology
  • Whole Genome Sequencing

Substances

  • Anti-Bacterial Agents
  • DNA, Bacterial