Co-existence of a novel plasmid-mediated efflux pump with colistin resistance gene mcr in one plasmid confers transferable multidrug resistance in Klebsiella pneumoniae

Emerg Microbes Infect. 2020 Dec;9(1):1102-1113. doi: 10.1080/22221751.2020.1768805.

Abstract

Tigecycline is considered one of the last-resort antimicrobials for carbapenem-resistant K. pneumoniae. Plasmid-mediated tigecycline resistance remains largely unclear. Here, by utilizing whole genome sequencing, we report a plasmid-mediated tigecycline resistance mechanism, a 6,489 bp Resistance-nodulation-division family (RND) efflux pump (tmexCD1-toprJ1 pump), that confers transferable tigecycline resistance in K pneumoniae isolated from patients and chickens. In addition, we identified high prevalence of the plasmids co-harbouring both tmexCD1-toprJ1 pump and mcr (tmexCD1-mcr co-harbouring plasmid) from human in our nationwide collection. Even worse, the tmexCD1-toprJ1 and mcr co-harbouring plasmid was also co-existed with bla NDM-harbouring IncX3 plasmid in the same host, resulting in pandrug resistance. Phylogenetic analysis suggested that the plasmid-borne tmexCD1-toprJ1 originated from the chromosome of Aeromonas spp. through Tn5393-mediating translocation. Both plasmid-harbored tmexCD1-toprJ1 gene and mcr-8 likely originated from animal isolates and then spread to human. Our findings highlight a substantial threat of tmexCD1-toprJ1-mcr8 co-harbouring IncFIA/IncFII plasmid to public health due to their mobile resistance to both tigecycline and colistin, emphasizing an urgent need for further global surveillance on this plasmid.

Keywords: mcr-8·5; tmexCD1-mcr co-harbouring plasmid; tmexCD1-toprJ1 efflux pump; CRKP; Plasmid-mediated tigecycline-resistant K. pneumoniae.

MeSH terms

  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Bacterial Proteins / genetics*
  • Chickens / microbiology
  • Colistin / pharmacology*
  • Drug Resistance, Multiple, Bacterial / genetics*
  • Humans
  • Klebsiella Infections / microbiology
  • Klebsiella pneumoniae / drug effects*
  • Klebsiella pneumoniae / genetics
  • Membrane Transport Proteins / genetics*
  • Microbial Sensitivity Tests
  • Phylogeny
  • Plasmids / genetics*
  • Whole Genome Sequencing

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Membrane Transport Proteins
  • Colistin

Grants and funding

This work was supported by the National Natural Science Foundation of China [grant number 81625014]. The authors thank Prof. Yuqing Liu (Shandong Academy of Agricultural Sciences) for collecting partial isolates. The authors also thank all the partners in the CMSS (Chinese Meropenem Surveillance Study) and CRE network for their contribution to this study.