Diazotrophic Community Variation Underlies Differences in Nitrogen Fixation Potential in Paddy Soils Across a Climatic Gradient in China

Microb Ecol. 2021 Feb;81(2):425-436. doi: 10.1007/s00248-020-01591-w. Epub 2020 Sep 8.

Abstract

Biological nitrogen (N2) fixation as a source of new N input into the soil by free-living diazotrophs is important for achieving sustainable rice agriculture. However, the dominant environmental drivers or factors influencing N2 fixation and the functional significance of the diazotroph community structure in paddy soil across a climatic gradient are not yet well understood. Thus, we characterized the diazotroph community and identified the ecological predictors of N2 fixation potential in four different climate zones (mid-temperate, warm-temperate, subtropical, and tropical paddy soils) in eastern China. Comprehensive nifH gene sequencing, functional activity detection, and correlation analysis with environmental factors were estimated. The potential nitrogenase activity (PNA) was highest in warm-temperate regions, where it was 6.2-, 2.9-, and 2.2-fold greater than in the tropical, subtropical, and mid-temperate regions, respectively; nifH gene abundance was significantly higher in warm-temperate and subtropical zones than in the tropical or mid-temperate zones. Diazotroph diversity was significantly higher in the tropical climate zone and significantly lower in the mid-temperate zone. Non-metric multidimensional scaling and canonical correlation analysis indicated that paddy soil diazotroph populations differed significantly among the four climate zones, mainly owing to differences in climate and soil pH. Structural equation models and automatic linear models revealed that climate and nutrients indirectly affected PNA by affecting soil pH and diazotroph community, respectively, while diazotroph community, C/P, and nifH gene abundance directly affected PNA. And C/P ratio, pH, and the diazotroph community structure were the main predictors of PNA in paddy soils. Collectively, the differences in diazotroph community structure have ecological significance, with important implications for the prediction of soil N2-fixing functions under climate change scenarios.

Keywords: Climate zone; Diazotrophs; Nitrogen fixation; Paddy soil; Potential nitrogenase activity; Rice.

MeSH terms

  • Carbon / analysis
  • Climate*
  • Hydrogen-Ion Concentration
  • Microbiota / genetics
  • Microbiota / physiology*
  • Nitrogen / analysis
  • Nitrogen / metabolism
  • Nitrogen Fixation / physiology*
  • Nitrogenase / analysis
  • Nitrogenase / metabolism
  • Oryza
  • Oxidoreductases / genetics
  • Phosphates / analysis
  • Soil / chemistry
  • Soil Microbiology*

Substances

  • Phosphates
  • Soil
  • Carbon
  • Oxidoreductases
  • Nitrogenase
  • nitrogenase reductase
  • Nitrogen