m6 A RNA methyltransferases METTL3/14 regulate immune responses to anti-PD-1 therapy

EMBO J. 2020 Oct 15;39(20):e104514. doi: 10.15252/embj.2020104514. Epub 2020 Sep 23.

Abstract

An impressive clinical success has been observed in treating a variety of cancers using immunotherapy with programmed cell death-1 (PD-1) checkpoint blockade. However, limited response in most patients treated with anti-PD-1 antibodies remains a challenge, requiring better understanding of molecular mechanisms limiting immunotherapy. In colorectal cancer (CRC) resistant to immunotherapy, mismatch-repair-proficient or microsatellite instability-low (pMMR-MSI-L) tumors have low mutation burden and constitute ~85% of patients. Here, we show that inhibition of N6 -methyladenosine (m6 A) mRNA modification by depletion of methyltransferases, Mettl3 and Mettl14, enhanced response to anti-PD-1 treatment in pMMR-MSI-L CRC and melanoma. Mettl3- or Mettl14-deficient tumors increased cytotoxic tumor-infiltrating CD8+ T cells and elevated secretion of IFN-γ, Cxcl9, and Cxcl10 in tumor microenvironment in vivo. Mechanistically, Mettl3 or Mettl14 loss promoted IFN-γ-Stat1-Irf1 signaling through stabilizing the Stat1 and Irf1 mRNA via Ythdf2. Finally, we found a negative correlation between METTL3 or METTL14 and STAT1 in 59 patients with pMMR-MSI-L CRC tumors. Altogether, our findings uncover a new awareness of the function of RNA methylation in adaptive immunity and provide METTL3 and METTL14 as potential therapeutic targets in anticancer immunotherapy.

Keywords: CD8+ T cells; colorectal carcinoma; immunotherapy; m6A methylation.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenosine / analogs & derivatives
  • Adenosine / metabolism
  • Animals
  • CD8-Positive T-Lymphocytes / immunology
  • Cell Line, Tumor
  • Cell Proliferation / drug effects*
  • Cell Proliferation / genetics
  • Chemokine CXCL10
  • Chemokine CXCL9 / metabolism
  • Colorectal Neoplasms / enzymology*
  • Colorectal Neoplasms / genetics
  • Colorectal Neoplasms / immunology
  • Colorectal Neoplasms / metabolism
  • Cytokines / metabolism*
  • Humans
  • Immune Checkpoint Inhibitors
  • Immunohistochemistry
  • Immunotherapy / methods*
  • Interferon Regulatory Factor-1 / genetics
  • Interferon Regulatory Factor-1 / metabolism
  • Interferon-gamma / metabolism
  • Melanoma / enzymology*
  • Melanoma / genetics
  • Melanoma / immunology
  • Melanoma / metabolism
  • Methyltransferases / genetics
  • Methyltransferases / metabolism*
  • Mice
  • Mice, Inbred BALB C
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Programmed Cell Death 1 Receptor / metabolism*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • RNA-Seq
  • STAT1 Transcription Factor / genetics
  • STAT1 Transcription Factor / metabolism
  • Tumor Microenvironment / genetics

Substances

  • CXCL10 protein, human
  • CXCL9 protein, human
  • Chemokine CXCL10
  • Chemokine CXCL9
  • Cytokines
  • IRF1 protein, human
  • Immune Checkpoint Inhibitors
  • Interferon Regulatory Factor-1
  • PDCD1 protein, human
  • Programmed Cell Death 1 Receptor
  • RNA-Binding Proteins
  • STAT1 Transcription Factor
  • YTHDF2 protein, human
  • Interferon-gamma
  • METTL14 protein, human
  • Methyltransferases
  • METTL3 protein, human
  • Adenosine

Associated data

  • GEO/GSE142589