Pathway Analysis of Selected Circulating miRNAs in Plasma of Breast Cancer Patients: A Preliminary Study

Int J Mol Sci. 2020 Oct 2;21(19):7288. doi: 10.3390/ijms21197288.

Abstract

MicroRNAs in the circulation of breast cancer (BC) patients have great potential for the early diagnosis, treatment and monitoring of breast cancer. The aim of this preliminary study was to obtain the expression profile of selected miRNAs in the plasma of BC patients that could discriminate BC patients from healthy volunteers and may be useful in early detection of BC. Significantly deregulated miRNAs were evaluated by pathway analysis with the prediction of potential miRNA targets. The study enrolled plasma samples from 65 BC patients and 34 healthy volunteers. Selected miRNAs were screened in pilot testing by the real-time PCR (qPCR) method, and the most appropriate reference genes were selected for normalisation by the geNorm algorithm. In the final testing, we detected miR-99a, miR-130a, miR-484 and miR-1260a (p < 0.05) as significantly up-regulated in the plasma of BC patients. Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analysis revealed that all significantly deregulated miRNAs are involved in the Hippo and Transforming Growth Factor-beta (TGF-beta) signalling pathways. Our study confirmed a different profile of selected circulating miRNAs in the plasma of BC patients with an emphasis on some critical points in the analysis process.

Keywords: breast cancer; circulating miRNA expression; delta–delta Ct; miR-1260a; miR-130a; miR-484; miR-99a; normalization; plasma.

MeSH terms

  • Aged
  • Breast Neoplasms / blood*
  • Breast Neoplasms / genetics
  • Breast Neoplasms / pathology
  • Circulating MicroRNA / blood
  • Circulating MicroRNA / classification
  • Disease-Free Survival
  • Female
  • Gene Expression Regulation, Neoplastic / genetics
  • Hippo Signaling Pathway
  • Humans
  • MicroRNAs / blood*
  • Middle Aged
  • Protein Serine-Threonine Kinases / genetics
  • Signal Transduction / genetics
  • Transforming Growth Factor beta / genetics

Substances

  • Circulating MicroRNA
  • MIRN1260 microRNA, human
  • MIRN130 microRNA, human
  • MIRN484 microRNA, human
  • MIRN99 microRNA, human
  • MicroRNAs
  • Transforming Growth Factor beta
  • Protein Serine-Threonine Kinases