SARS-CoV-2 infection activates a subset of intrinsic pathways to inhibit type I interferons in vitro and in vivo

Int J Med Sci. 2021 Apr 28;18(12):2561-2569. doi: 10.7150/ijms.56630. eCollection 2021.

Abstract

SARS-CoV-2 infection poses a global challenge to human health. Upon viral infection, host cells initiate the innate antiviral response, which primarily involves type I interferons (I-IFNs), to enable rapid elimination of the invading virus. Previous studies revealed that SARS-CoV-2 infection limits the expression of I-IFNs in vitro and in vivo, but the underlying mechanism remains incompletely elucidated. In the present study, we performed data mining and longitudinal data analysis using SARS-CoV-2-infected normal human bronchial epithelial (NHBE) cells and ferrets, and the results confirmed the strong inhibitory effect of SARS-CoV-2 on the induction of I-IFNs. Moreover, we identified genes that are negatively correlated with IFNB1 expression in vitro and in vivo based on Pearson correlation analysis. We found that SARS-CoV-2 activates numerous intrinsic pathways, such as the circadian rhythm, phosphatidylinositol signaling system, peroxisome, and TNF signaling pathways, to inhibit I-IFNs. These intrinsic inhibitory pathways jointly facilitate the successful immune evasion of SARS-CoV-2. Our study elucidates the underlying mechanism by which SARS-CoV-2 evades the host innate antiviral response in vitro and in vivo, providing theoretical evidence for targeting these immune evasion-associated pathways to combat SARS-CoV-2 infection.

Keywords: SARS-CoV-2; immune evasion; innate antiviral responses; type I IFNs.

MeSH terms

  • Animals
  • Bronchi / cytology
  • COVID-19 / immunology*
  • COVID-19 / virology
  • Cell Line
  • Datasets as Topic
  • Disease Models, Animal
  • Epithelial Cells
  • Ferrets
  • Gene Expression Regulation / immunology
  • Host-Pathogen Interactions / genetics
  • Host-Pathogen Interactions / immunology*
  • Humans
  • Immunity, Innate
  • Interferon-gamma / immunology
  • Interferon-gamma / metabolism*
  • RNA-Seq
  • Respiratory Mucosa / cytology
  • SARS-CoV-2 / immunology*
  • Signal Transduction / genetics
  • Signal Transduction / immunology

Substances

  • IFNG protein, human
  • Interferon-gamma