Strategies to Study the Functions of Pseudogenes in Mouse Models of Cancer

Methods Mol Biol. 2021:2324:287-304. doi: 10.1007/978-1-0716-1503-4_18.

Abstract

Aberrant expression of pseudogenes has been observed in many cancer types. Deregulated pseudogenes engage in a multitude of biological processes at the DNA, RNA, and protein levels and eventually facilitate disease progression. To investigate pseudogene functions in cancer, cell lines and cell line transplantation models have been widely used. However, cancer biology is best studied in the context of an intact organism. Here, we present various strategies to investigate pseudogenes in genetically engineered mouse models and discuss advantages and disadvantages of the different approaches.

Keywords: Cancer; ESC-GEMM; Genetically engineered mouse model; Pseudogene.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Cell Line, Tumor
  • Drug Resistance, Microbial / genetics
  • Embryonic Stem Cells
  • Gene Expression Regulation
  • Genes, Synthetic
  • Heterografts
  • Humans
  • Mice
  • Mice, Transgenic
  • Molecular Targeted Therapy
  • Neoplasm Transplantation
  • Neoplasms, Experimental / genetics*
  • Promoter Regions, Genetic
  • Pseudogenes / genetics*
  • RNA Interference
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / genetics
  • Species Specificity
  • Tetracycline / pharmacology
  • Up-Regulation

Substances

  • Recombinant Proteins
  • Tetracycline