Nuclear-localized human respiratory syncytial virus NS1 protein modulates host gene transcription

Cell Rep. 2021 Oct 12;37(2):109803. doi: 10.1016/j.celrep.2021.109803.

Abstract

Human respiratory syncytial virus (RSV) is a common cause of lower respiratory tract infections in the pediatric, elderly, and immunocompromised individuals. RSV non-structural protein NS1 is a known cytosolic immune antagonist, but how NS1 modulates host responses remains poorly defined. Here, we observe NS1 partitioning into the nucleus of RSV-infected cells, including the human airway epithelium. Nuclear NS1 coimmunoprecipitates with Mediator complex and is chromatin associated. Chromatin-immunoprecipitation demonstrates enrichment of NS1 that overlaps Mediator and transcription factor binding within the promoters and enhancers of differentially expressed genes during RSV infection. Mutation of the NS1 C-terminal helix reduces NS1 impact on host gene expression. These data suggest that nuclear NS1 alters host responses to RSV infection by binding at regulatory elements of immune response genes and modulating host gene transcription. Our study identifies another layer of regulation by virally encoded proteins that shapes host response and impacts immunity to RSV.

Keywords: NS1; epigenetics; host gene transcription; immune antagonism; non-structural protein; respiratory syncytial virus.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • A549 Cells
  • Animals
  • Binding Sites
  • Cell Nucleus / metabolism*
  • Cell Nucleus / virology
  • Chromatin / genetics
  • Chromatin / metabolism*
  • Chromatin / virology
  • Dendritic Cells / metabolism*
  • Dendritic Cells / virology
  • Epithelial Cells / metabolism*
  • Epithelial Cells / virology
  • Female
  • HEK293 Cells
  • Host-Pathogen Interactions
  • Humans
  • Lung / metabolism*
  • Lung / virology
  • Mediator Complex / genetics
  • Mediator Complex / metabolism
  • Mice
  • Mice, Inbred BALB C
  • Promoter Regions, Genetic
  • Respiratory Syncytial Virus Infections / genetics
  • Respiratory Syncytial Virus Infections / metabolism*
  • Respiratory Syncytial Virus Infections / virology
  • Respiratory Syncytial Virus, Human / genetics
  • Respiratory Syncytial Virus, Human / metabolism*
  • Respiratory Syncytial Virus, Human / pathogenicity
  • Transcription, Genetic*
  • Viral Nonstructural Proteins / genetics
  • Viral Nonstructural Proteins / metabolism*

Substances

  • Chromatin
  • Mediator Complex
  • Viral Nonstructural Proteins