Integrative analysis of CRISPR screening data uncovers new opportunities for optimizing cancer immunotherapy

Mol Cancer. 2022 Jan 2;21(1):2. doi: 10.1186/s12943-021-01462-z.

Abstract

Background: In recent years, the application of functional genetic immuno-oncology screens has showcased the striking ability to identify potential regulators engaged in tumor-immune interactions. Although these screens have yielded substantial data, few studies have attempted to systematically aggregate and analyze them.

Methods: In this study, a comprehensive data collection of tumor immunity-associated functional screens was performed. Large-scale genomic data sets were exploited to conduct integrative analyses.

Results: We identified 105 regulator genes that could mediate resistance or sensitivity to immune cell-induced tumor elimination. Further analysis identified MON2 as a novel immune-oncology target with considerable therapeutic potential. In addition, based on the 105 genes, a signature named CTIS (CRISPR screening-based tumor-intrinsic immune score) for predicting response to immune checkpoint blockade (ICB) and several immunomodulatory agents with the potential to augment the efficacy of ICB were also determined.

Conclusion: Overall, our findings provide insights into immune oncology and open up novel opportunities for improving the efficacy of current immunotherapy agents.

Keywords: CRISPR screen; Connectivity map; Drug repurposing; Immune checkpoint blockade; MON2; Tumor immunity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antineoplastic Agents, Immunological / administration & dosage
  • Antineoplastic Agents, Immunological / adverse effects
  • Antineoplastic Agents, Immunological / therapeutic use
  • CRISPR-Cas Systems*
  • Clinical Decision-Making
  • Clustered Regularly Interspaced Short Palindromic Repeats*
  • Computational Biology / methods
  • Disease Management
  • Gene Expression Profiling
  • Gene Regulatory Networks
  • Genetic Testing / methods*
  • Genomics / methods*
  • Humans
  • Immunotherapy / methods
  • Immunotherapy / standards
  • Medical Oncology* / methods
  • Medical Oncology* / standards
  • Prognosis
  • Transcriptome
  • Treatment Outcome

Substances

  • Antineoplastic Agents, Immunological