Whole-genome CRISPR screening identifies genetic manipulations to reduce immune rejection of stem cell-derived islets

Stem Cell Reports. 2022 Sep 13;17(9):1976-1990. doi: 10.1016/j.stemcr.2022.08.002. Epub 2022 Sep 1.

Abstract

Human embryonic stem cells (hESCs) provide opportunities for cell replacement therapy of insulin-dependent diabetes. Therapeutic quantities of human stem cell-derived islets (SC-islets) can be produced by directed differentiation. However, preventing allo-rejection and recurring autoimmunity, without the use of encapsulation or systemic immunosuppressants, remains a challenge. An attractive approach is to transplant SC-islets, genetically modified to reduce the impact of immune rejection. To determine the underlying forces that drive immunogenicity of SC-islets in inflammatory environments, we performed single-cell RNA sequencing (scRNA-seq) and whole-genome CRISPR screen of SC-islets under immune interaction with allogeneic peripheral blood mononuclear cells (PBMCs). Data analysis points to "alarmed" populations of SC-islets that upregulate genes in the interferon (IFN) pathway. The CRISPR screen in vivo confirms that targeting IFNγ-induced mediators has beneficial effects on SC-islet survival under immune attack. Manipulating the IFN response by depleting chemokine ligand 10 (CXCL10) in SC-islet grafts confers improved survival against allo-rejection compared with wild-type grafts in humanized mice. These results offer insights into the nature of immune destruction of SC-islets during allogeneic responses and provide targets for gene editing.

Keywords: CXCL10; T1D; beta cells; chemokine; diabetes; hypo-immunogenicity; immunogenicity; pancreatic islets; transplantation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • Human Embryonic Stem Cells*
  • Humans
  • Islets of Langerhans Transplantation* / methods
  • Islets of Langerhans*
  • Leukocytes, Mononuclear
  • Mice