Population structure and genetic connectivity of the scalloped hammerhead shark (Sphyrna lewini) across nursery grounds from the Eastern Tropical Pacific: Implications for management and conservation

PLoS One. 2022 Dec 16;17(12):e0264879. doi: 10.1371/journal.pone.0264879. eCollection 2022.

Abstract

Defining demographically independent units and understanding patterns of gene flow between them is essential for managing and conserving exploited populations. The critically endangered scalloped hammerhead shark, Sphyrna lewini, is a coastal semi-oceanic species found worldwide in tropical and subtropical waters. Pregnant females give birth in shallow coastal estuarine habitats that serve as nursery grounds for neonates and small juveniles, whereas adults move offshore and become highly migratory. We evaluated the population structure and connectivity of S. lewini in coastal areas and one oceanic island (Cocos Island) across the Eastern Tropical Pacific (ETP) using both sequences of the mitochondrial DNA control region (mtCR) and 9 nuclear-encoded microsatellite loci. The mtCR defined two genetically discrete groups: one in the Mexican Pacific and another one in the central-southern Eastern Tropical Pacific (Guatemala, Costa Rica, Panama, and Colombia). Overall, the mtCR data showed low levels of haplotype diversity ranging from 0.000 to 0.608, while nucleotide diversity ranged from 0.000 to 0.0015. More fine-grade population structure was detected using microsatellite loci where Guatemala, Costa Rica, and Panama differed significantly. Relatedness analysis revealed that individuals within nursery areas were more closely related than expected by chance, suggesting that S. lewini may exhibit reproductive philopatric behaviour within the ETP. Findings of at least two different management units, and evidence of philopatric behaviour call for intensive conservation actions for this highly threatened species in the ETP.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Birds / genetics
  • DNA, Mitochondrial / genetics
  • Endangered Species
  • Female
  • Genetics, Population
  • Microsatellite Repeats / genetics
  • Sharks* / genetics

Substances

  • DNA, Mitochondrial

Grants and funding

(YR-A) National Secretary of Science and Technology SENACYT (FID-156) https://www.senacyt.gob.pa/en/ (EA/ CA)The Phoenix Zoo (grant project no. 33297) https://www.phoenixzoo.org/ (EA/CA) PADI Foundation (grant no. 32809) http://www.padifoundation.org/ (EA/ CA)Waitt Foundation (grant project no. 33297) https://www.waittfoundation.org/ (EA/CA) Rufford Foundation (grant. no. 22366-1) https://www.rufford.org/ (OB) Fundación Reserva Ojochal https://reservaplayatortuga.org/ (RA) The Whitley Fund for Nature https://whitleyaward.org/ (RA) Sandler Family Foundation https://www.sandlerfoundation.org/ (ME-S) Osa Conservation https://osaconservation.org/ (ME-S) Sistema de Estudios de Posgrado of Universidad de Costa Rica https://www.sep.ucr.ac.cr/ The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.