Development of Human Carbonic Anhydrase II Heterobifunctional Degraders

J Med Chem. 2023 Feb 23;66(4):2789-2803. doi: 10.1021/acs.jmedchem.2c01843. Epub 2023 Feb 3.

Abstract

Human carbonic anhydrase II (hCAII) is a metalloenzyme essential to critical physiological processes in the body. hCA inhibitors are used clinically for the treatment of indications ranging from glaucoma to epilepsy. Targeted protein degraders have emerged as a promising means of inducing the degradation of disease-implicated proteins by using the endogenous quality control mechanisms of a cell. Here, a series of heterobifunctional degrader candidates targeting hCAII were developed from a simple aryl sulfonamide fragment. Degrader candidates were functionalized to produce either cereblon E3 ubiquitin ligase (CRBN) recruiting proteolysis targeting chimeras (PROTACs) or adamantyl-based hydrophobic tags (HyTs). Screens in HEK293 cells identified two PROTAC small-molecule degraders of hCA. Optimization of linker length and composition yielded a degrader with sub-nanomolar potency and sustained depletion of hCAII over prolonged treatments. Mechanistic studies suggest that this optimized degrader depletes hCAII through the same mechanism as previously reported CRBN-recruiting heterobifunctional degraders.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carbonic Anhydrase II* / metabolism
  • HEK293 Cells
  • Humans
  • Proteins / metabolism
  • Proteolysis
  • Ubiquitin-Protein Ligases* / metabolism

Substances

  • Carbonic Anhydrase II
  • Ubiquitin-Protein Ligases
  • Proteins