Comprehensive screening strategy coupled with structure-guided engineering of l-threonine aldolase from Pseudomonas putida for enhanced catalytic efficiency towards l- threo-4-methylsulfonylphenylserine

Front Bioeng Biotechnol. 2023 Jan 30:11:1117890. doi: 10.3389/fbioe.2023.1117890. eCollection 2023.

Abstract

l-Threonine aldolases (TAs) can catalyze aldol condensation reactions to form β-hydroxy-α-amino acids, but afford unsatisfactory conversion and poor stereoselectivity at the Cβ position. In this study, a directed evolution coupling high-throughput screening method was developed to screen more efficient l-TA mutants based on their aldol condensation activity. A mutant library with over 4000 l-TA mutants from Pseudomonas putida were obtained by random mutagenesis. About 10% of mutants retained activity toward 4-methylsulfonylbenzaldehyde, with five site mutations (A9L, Y13K, H133N, E147D, and Y312E) showing higher activity. Iterative combinatorial mutant A9V/Y13K/Y312R catalyzed l-threo-4-methylsulfonylphenylserine with a 72% conversion and 86% diastereoselectivity, representing 2.3-fold and 5.1-fold improvements relative to the wild-type. Molecular dynamics simulations illustrated that additional hydrogen bonds, water bridge force, hydrophobic interactions, and π-cation interactions were present in the A9V/Y13K/Y312R mutant compared with the wild-type to reshape the substrate-binding pocket, resulting in a higher conversion and Cβ stereoselectivity. This study provides a useful strategy for engineering TAs to resolve the low Cβ stereoselectivity problem and contributes to the industrial application of TAs.

Keywords: Pseudomonas putida; high-throughput screening; product enantioselectivity; structure-guided engineering; threonine aldolases.

Grants and funding

This work was supported by the National Key research and Development Program of China (2018YFA0900302), the National Science Foundation of China (32271487, 31970045), the National First-class Discipline Program of Light Industry Technology and Engineering (LITE 2018-12), the Program of Introducing Talents of Discipline to Universities (111-2-06).