Prioritization of therapeutic targets for dyslipidemia using integrative multi-omics and multi-trait analysis

Cell Rep Med. 2023 Sep 19;4(9):101112. doi: 10.1016/j.xcrm.2023.101112. Epub 2023 Aug 14.

Abstract

Drug targets with genetic support are several-fold more likely to succeed in clinical trials. We introduce a genetic-driven approach based on causal inferences that can inform drug target prioritization, repurposing, and adverse effects of using lipid-lowering agents. Given that a multi-trait approach increases the power to detect meaningful variants/genes, we conduct multi-omics and multi-trait analyses, followed by network connectivity investigations, and prioritize 30 potential therapeutic targets for dyslipidemia, including SORT1, PSRC1, CELSR2, PCSK9, HMGCR, APOB, GRN, HFE2, FJX1, C1QTNF1, and SLC5A8. 20% (6/30) of prioritized targets from our hypothesis-free drug target search are either approved or under investigation for dyslipidemia. The prioritized targets are 22-fold higher in likelihood of being approved or under investigation in clinical trials than genome-wide association study (GWAS)-curated targets. Our results demonstrate that the genetic-driven approach used in this study is a promising strategy for prioritizing targets while informing about the potential adverse effects and repurposing opportunities.

Keywords: Mendelian randomization; PRS; PheWAS; dyslipidemia; eQTL; multi-omics; pQTL; plasma lipids; therapeutic targets.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Dyslipidemias* / drug therapy
  • Dyslipidemias* / genetics
  • Genome-Wide Association Study / methods
  • Humans
  • Monocarboxylic Acid Transporters / genetics
  • Multiomics
  • Polymorphism, Single Nucleotide
  • Proprotein Convertase 9* / genetics

Substances

  • PCSK9 protein, human
  • Proprotein Convertase 9
  • SLC5A8 protein, human
  • Monocarboxylic Acid Transporters