Chromosome-level genome of the transformable northern wattle, Acacia crassicarpa

G3 (Bethesda). 2024 Mar 6;14(3):jkad284. doi: 10.1093/g3journal/jkad284.

Abstract

The genus Acacia is a large group of woody legumes containing an enormous amount of morphological diversity in leaf shape. This diversity is at least in part the result of an innovation in leaf development where many Acacia species are capable of developing leaves of both bifacial and unifacial morphologies. While not unique in the plant kingdom, unifaciality is most commonly associated with monocots, and its developmental genetic mechanisms have yet to be explored beyond this group. In this study, we identify an accession of Acacia crassicarpa with high regeneration rates and isolate a clone for genome sequencing. We generate a chromosome-level assembly of this readily transformable clone, and using comparative analyses, confirm a whole-genome duplication unique to Caesalpinoid legumes. This resource will be important for future work examining genome evolution in legumes and the unique developmental genetic mechanisms underlying unifacial morphogenesis in Acacia.

Keywords: Acacia crassicarpa; Acra3RX; Caesalpinioideae; northern wattle; transformation; unifacial morphogenesis; whole-genome duplication.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, N.I.H., Extramural

MeSH terms

  • Acacia* / genetics
  • Animals
  • Base Sequence
  • Chromosomes
  • Comb and Wattles