Novel 14q32.2 paternal deletion encompassing the whole DLK1 gene associated with Temple syndrome

Clin Epigenetics. 2024 May 7;16(1):62. doi: 10.1186/s13148-024-01652-8.

Abstract

Background: Temple syndrome (TS14) is a rare imprinting disorder caused by maternal UPD14, imprinting defects or paternal microdeletions which lead to an increase in the maternal expressed genes and a silencing the paternally expressed genes in the 14q32 imprinted domain. Classical TS14 phenotypic features include pre- and postnatal short stature, small hands and feet, muscular hypotonia, motor delay, feeding difficulties, weight gain, premature puberty along and precocious puberty.

Methods: An exon array comparative genomic hybridization was performed on a patient affected by psychomotor and language delay, muscular hypotonia, relative macrocephaly, and small hand and feet at two years old. At 6 years of age, the proband presented with precocious thelarche. Genes dosage and methylation within the 14q32 region were analyzed by MS-MLPA. Bisulfite PCR and pyrosequencing were employed to quantification methylation at the four known imprinted differentially methylated regions (DMR) within the 14q32 domain: DLK1 DMR, IG-DMR, MEG3 DMR and MEG8 DMR.

Results: The patient had inherited a 69 Kb deletion, encompassing the entire DLK1 gene, on the paternal allele. Relative hypermethylation of the two maternally methylated intervals, DLK1 and MEG8 DMRs, was observed along with normal methylation level at IG-DMR and MEG3 DMR, resulting in a phenotype consistent with TS14. Additional family members with the deletion showed modest methylation changes at both the DLK1 and MEG8 DMRs consistent with parental transmission.

Conclusion: We describe a girl with clinical presentation suggestive of Temple syndrome resulting from a small paternal 14q32 deletion that led to DLK1 whole-gene deletion, as well as hypermethylation of the maternally methylated DLK1-DMR.

Keywords: DLK1; DMR; Deletion; Methylation; Temple syndrome (TS14).

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Abnormalities, Multiple / genetics
  • Calcium-Binding Proteins* / genetics
  • Child
  • Chromosome Deletion
  • Chromosomes, Human, Pair 14* / genetics
  • Comparative Genomic Hybridization / methods
  • DNA Methylation* / genetics
  • Facies
  • Genomic Imprinting* / genetics
  • Humans
  • Imprinting Disorders
  • Intercellular Signaling Peptides and Proteins* / genetics
  • Membrane Proteins / genetics
  • Muscle Hypotonia
  • Phenotype

Substances

  • Calcium-Binding Proteins
  • DLK1 protein, human
  • Intercellular Signaling Peptides and Proteins
  • Membrane Proteins

Supplementary concepts

  • Temple syndrome