Innovative PNA-LB mediated allele-specific LAMP for KRAS mutation profiling on a compact lab-on-a-disc device

Talanta. 2024 Aug 15:276:126224. doi: 10.1016/j.talanta.2024.126224. Epub 2024 May 6.

Abstract

Tailored healthcare, an approach focused on individual patients, requires integrating emerging interdisciplinary technologies to develop accurate and user-friendly diagnostic tools. KRAS mutations, prevalent in various common cancers, are crucial determinants in selecting patients for novel KRAS inhibitor therapies. This study presents a novel state-of-the-art Lab-on-a-Disc system utilizing peptide nucleic acids-loop backward (PNA-LB) mediated allele-specific loop-mediated isothermal amplification (LAMP) for detecting the frequent G12D KRAS mutation, signifying its superiority over alternative mutation detection approaches. The designed Lab-on-a-Disc system demonstrated exceptional preclinical and technical precision, accuracy, and versatility. By applying varying cutoff values to PNA- LB LAMP reactions, the assay's sensitivity and specificity were increased by 80 % and 90 %, respectively. The device's key advantages include a robust microfluidic Lab-on-a-Disc design, precise rotary control, and a cutting-edge induction heating module. These features enable multiplexing of LAMP reactions with high reproducibility and repeatability, with CV% values less than 3.5 % and 5.5 %, respectively. The device offers several methods for accurate endpoint result detection, including naked-eye observation, RGB image analysis using Python code, and time of fluorescence (Tf) values. Preclinical specificity and sensitivity, assessed using different cutoffs for Eva-Green fluorescence Tf values and pH-sensitive dyes, demonstrated comparable performance to the best standard methods. Overall, this study represents a significant step towards tailoring treatment strategies for cancer patients through precise and efficient mutation detection technologies.

Keywords: Allele-specific LAMP; KRAS mutation; Lab-on-Disc; Molecular diagnosis; Peptide nucleic acids.

MeSH terms

  • Alleles
  • Humans
  • Lab-On-A-Chip Devices*
  • Molecular Diagnostic Techniques / methods
  • Mutation*
  • Nucleic Acid Amplification Techniques* / methods
  • Peptide Nucleic Acids* / chemistry
  • Peptide Nucleic Acids* / genetics
  • Proto-Oncogene Proteins p21(ras)* / genetics

Substances

  • KRAS protein, human
  • Peptide Nucleic Acids
  • Proto-Oncogene Proteins p21(ras)

Supplementary concepts

  • LAMP assay