A de novo designed coiled coil-based switch regulates the microtubule motor kinesin-1

Nat Chem Biol. 2024 Jul;20(7):916-923. doi: 10.1038/s41589-024-01640-2. Epub 2024 Jun 7.

Abstract

Many enzymes are allosterically regulated via conformational change; however, our ability to manipulate these structural changes and control function is limited. Here we install a conformational switch for allosteric activation into the kinesin-1 microtubule motor in vitro and in cells. Kinesin-1 is a heterotetramer that accesses open active and closed autoinhibited states. The equilibrium between these states centers on a flexible elbow within a complex coiled-coil architecture. We target the elbow to engineer a closed state that can be opened with a de novo designed peptide. The alternative states are modeled computationally and confirmed by biophysical measurements and electron microscopy. In cells, peptide-driven activation increases kinesin transport, demonstrating a primary role for conformational switching in regulating motor activity. The designs are enabled by our understanding of ubiquitous coiled-coil structures, opening possibilities for controlling other protein activities.

MeSH terms

  • Allosteric Regulation
  • Humans
  • Kinesins* / chemistry
  • Kinesins* / metabolism
  • Microtubules* / metabolism
  • Models, Molecular
  • Peptides / chemistry
  • Peptides / metabolism
  • Protein Conformation

Substances

  • Kinesins
  • Peptides