Conformational ensembles in Klebsiella pneumoniae FimH impact uropathogenesis

Proc Natl Acad Sci U S A. 2024 Sep 24;121(39):e2409655121. doi: 10.1073/pnas.2409655121. Epub 2024 Sep 17.

Abstract

Klebsiella pneumoniae is an important pathogen causing difficult-to-treat urinary tract infections (UTIs). Over 1.5 million women per year suffer from recurrent UTI, reducing quality of life and causing substantial morbidity and mortality, especially in the hospital setting. Uropathogenic E. coli (UPEC) is the most prevalent cause of UTI. Like UPEC, K. pneumoniae relies on type 1 pili, tipped with the mannose-binding adhesin FimH, to cause cystitis. However, K. pneumoniae FimH is a poor binder of mannose, despite a mannose-binding pocket identical to UPEC FimH. FimH is composed of two domains that are in an equilibrium between tense (low-affinity) and relaxed (high-affinity) conformations. Substantial interdomain interactions in the tense conformation yield a low-affinity, deformed mannose-binding pocket, while domain-domain interactions are broken in the relaxed state, resulting in a high-affinity binding pocket. Using crystallography, we identified the structural basis by which domain-domain interactions direct the conformational equilibrium of K. pneumoniae FimH, which is strongly shifted toward the low-affinity tense state. Removal of the pilin domain restores mannose binding to the lectin domain, thus showing that poor mannose binding by K. pneumoniae FimH is not an inherent feature of the mannose-binding pocket. Phylogenetic analyses of K. pneumoniae genomes found that FimH sequences are highly conserved. However, we surveyed a collection of K. pneumoniae isolates from patients with long-term indwelling catheters and identified isolates that possessed relaxed higher-binding FimH variants, which increased K. pneumoniae fitness in bladder infection models, suggesting that long-term residence within the urinary tract may select for higher-binding FimH variants.

Keywords: UTI; bacterial pathogenesis; mechanism of bacterial colonization.

MeSH terms

  • Adhesins, Bacterial / chemistry
  • Adhesins, Bacterial / genetics
  • Adhesins, Bacterial / metabolism
  • Adhesins, Escherichia coli / chemistry
  • Adhesins, Escherichia coli / genetics
  • Adhesins, Escherichia coli / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Female
  • Fimbriae Proteins* / chemistry
  • Fimbriae Proteins* / genetics
  • Fimbriae Proteins* / metabolism
  • Fimbriae, Bacterial / metabolism
  • Humans
  • Klebsiella Infections / microbiology
  • Klebsiella pneumoniae* / genetics
  • Klebsiella pneumoniae* / metabolism
  • Mannose* / metabolism
  • Models, Molecular
  • Protein Binding
  • Protein Conformation
  • Protein Domains
  • Urinary Tract Infections* / microbiology

Substances

  • Fimbriae Proteins
  • Mannose
  • Adhesins, Escherichia coli
  • Adhesins, Bacterial
  • fimH protein, E coli