New antibacterial candidates against Acinetobacter baumannii discovered by in silico-driven chemogenomics repurposing

PLoS One. 2024 Sep 26;19(9):e0307913. doi: 10.1371/journal.pone.0307913. eCollection 2024.

Abstract

Acinetobacter baumannii is a worldwide Gram-negative bacterium with a high resistance rate, responsible for a broad spectrum of hospital-acquired infections. A computational chemogenomics framework was applied to investigate the repurposing of approved drugs to target A. baumannii. This comprehensive approach involved compiling and preparing proteomic data, identifying homologous proteins in drug-target databases, evaluating the evolutionary conservation of targets, and conducting molecular docking studies and in vitro assays. Seven drugs were selected for experimental assays. Among them, tavaborole exhibited the most promising antimicrobial activity with a minimum inhibitory concentration (MIC) value of 2 μg/ml, potent activity against several clinically relevant strains, and robust efficacy against biofilms from multidrug-resistant strains at a concentration of 16 μg/ml. Molecular docking studies elucidated the binding modes of tavaborole in the editing and active domains of leucyl-tRNA synthetase, providing insights into its structural basis for antimicrobial activity. Tavaborole shows promise as an antimicrobial agent for combating A. baumannii infections and warrants further investigation in preclinical studies.

MeSH terms

  • Acinetobacter Infections / drug therapy
  • Acinetobacter Infections / microbiology
  • Acinetobacter baumannii* / drug effects
  • Anti-Bacterial Agents* / chemistry
  • Anti-Bacterial Agents* / pharmacology
  • Biofilms / drug effects
  • Computer Simulation
  • Drug Repositioning*
  • Humans
  • Microbial Sensitivity Tests*
  • Molecular Docking Simulation*
  • Proteomics / methods

Substances

  • Anti-Bacterial Agents

Grants and funding

APJK and AK received a productivity fellowship from CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico), grant numbers: 314366/2020-2 and 303671/2019-0, respectively; AK and BJN received a research grants from FAPEG (Fundação de Amparo à Pesquisa do Estado de Goiás), grant numbers: 202310267000892 and 202310267001412, respectively. This study was partlially funded by AUXPE/CAPES n. 88881.845026/2023-01. The funders had no role in study design, data collection, and analysis, decision to publish, or preparation of the manuscript.