Isolation of cDNA clones for 42 different Krüppel-related zinc finger proteins expressed in the human monoblast cell line U-937

DNA Cell Biol. 1995 Feb;14(2):125-36. doi: 10.1089/dna.1995.14.125.

Abstract

To study the complexity and structural characteristics of zinc finger proteins expressed during human hematopoiesis and to isolate novel regulators of blood cell development, a degenerate oligonucleotide probe specific for a consensus zinc finger peptide domain was used to isolate 63 cDNA clones for Krüppel-related zinc finger genes from the human monoblast cell line U-937. By extensive nucleotide sequence and Northern blot analysis, these cDNA clones were found to originate from approximately 42 different genes (HZF 1-42) of which only 8 have previously been described. Northern blot analysis showed that a majority of these genes were expressed at comparable levels in U-937 and HeLa cells. The large number of individual genes represented among the 63 clones and their apparent non-cell-type-specific expression suggest that the majority of the Krüppel-related zinc finger genes are likely to be expressed in most human tissues. In contrast, some of the genes displayed a restricted expression pattern, indicating that they represent potential regulators of monocyte differentiation or proliferation. Detailed structural analysis of the first 12 cDNAs (HZF 1-10) and a partial characterization of HZF 11-42 revealed that a common feature of human Krüppel-related zinc finger proteins is the presence of tandem arrays of zinc fingers ranging in number from 3 to over 20 that are preferentially located in the carboxy-terminal regions of the proteins. In addition, several novel KRAB-containing zinc finger genes and a novel conserved sequence element were identified.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cell Line
  • Cloning, Molecular
  • Conserved Sequence
  • DNA, Complementary / genetics*
  • DNA-Binding Proteins / genetics*
  • Gene Expression
  • HeLa Cells
  • Humans
  • Kruppel-Like Transcription Factors
  • Molecular Sequence Data
  • Monocytes / metabolism*
  • Organ Specificity
  • RNA, Messenger / analysis*
  • RNA, Messenger / genetics
  • Repressor Proteins*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Transcription Factors / genetics*
  • Zinc Fingers / genetics*

Substances

  • DNA, Complementary
  • DNA-Binding Proteins
  • Kruppel-Like Transcription Factors
  • RNA, Messenger
  • Repressor Proteins
  • Transcription Factors

Associated data

  • GENBANK/X78924
  • GENBANK/X78925
  • GENBANK/X78926
  • GENBANK/X78927
  • GENBANK/X78928
  • GENBANK/X78929
  • GENBANK/X78930
  • GENBANK/X78931
  • GENBANK/X78932
  • GENBANK/X78933