Design and evaluation of new, highly sensitive and specific primers for polymerase chain reaction detection of HIV-1 infected primary lymphocytes

Mol Cell Probes. 1994 Aug;8(4):317-22. doi: 10.1006/mcpr.1994.1043.

Abstract

Primer pairs in the HIV-1 POL and ENV genes were evaluated by performing a PCR on lysed peripheral blood mononuclear cells (PBMCs) from 96 HIV-1 seropositive and 40 seronegative individuals originating from 16 different geographical localities in Africa, Europe and Haiti. A single PCR using primer pairs to the LTR, GAG and ENV regions and detection by radioactively labelled oligonucleotide probes was compared to a nested PCR scheme using newly designed POL and ENV primers which used ethidium-bromide staining of the amplified product on agarose gel. The newly designed POL nested primer pair was shown to be highly sensitive (93%) and specific (100%) for the detection of HIV-1 proviral DNA of very diverse geographical and genetic origin, including highly aberrant HIV-1 isolates. The sensitivity of the newly designed ENV primers was 68.7%, which does not differ significantly from the sensitivity of the classical primers, SK 68/69. Both ENV primers were unable to amplify two SIVcpz isolates from naturally infected chimpanzees.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa
  • Base Sequence
  • DNA Primers*
  • Europe
  • Genes, env
  • Genes, pol
  • HIV Infections / diagnosis*
  • HIV Infections / virology
  • HIV Seronegativity
  • HIV-1 / genetics
  • HIV-1 / isolation & purification*
  • Haiti
  • Humans
  • Leukocytes, Mononuclear / virology*
  • Lymphocytes / virology*
  • Molecular Sequence Data
  • Polymerase Chain Reaction*
  • Sensitivity and Specificity
  • Viremia / diagnosis*
  • Viremia / virology

Substances

  • DNA Primers