Human body composition can be organized into five levels; atomic, molecular, cellular, tissue-system and whole body. Six elements (carbon, nitrogen, calcium, potassium, sodium and chlorine) can be directly measured in vivo at the atomic level using three neutron-activation systems at Brookhaven National Laboratory. When combined with an estimate of total body water, the six elements can be used to quantify the major chemical components at molecular level. In the present report, we first describe the neutron-activation approach to evaluating chemical compartments in vivo. Then, we present an example of how in vivo estimates of human chemical composition can be used to study the validity of two-compartment indirect methods of quantifying total body fat in the elderly. Our studies and the work of other investigators at Brookhaven National Laboratory suggest that neutron activation analysis provides an important opportunity to study the relation between aging and changes in elemental and chemical composition of humans in vivo.