Envelope gene sequences of human T-lymphotropic virus type 1 in Taiwan

Arch Virol. 1996;141(2):219-29. doi: 10.1007/BF01718395.

Abstract

Three major types of HTLV-1 had been proposed, the Melanesian type, the Zairian type, and the cosmopolitan type, which was further divided into subtypes A, B and C, according to the phylogenetic tree constructed from LTR sequences of current HTLV-isolates. In this study, the envelope gene sequences of HTLV-1 from 9 Taiwanese were analyzed. Based on the phylogenetic tree constructed by unweighted pair group method and the sequence homology analysis by GCG computer programs, the envelope gene sequences of HTLV-1 proviruses from these 9 Taiwanese belonged to subtype A or subtype B of the cosmopolitan type and were closely related to HTLV-1 from Japan. Twelve subtype-specific nucleotide variations were deduced from the comparison of complete or partial envelope gene sequences of 16 HTLV-1 isolates of known subtypes as well as those of 9 Taiwanese. These data provided the basis for subtyping the cosmopolitan type of HTLV-1 by amplification of envelope gene sequences and restriction fragment length polymorphism studies. A more extensive survey based upon this proposal was warranted.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA Primers
  • DNA, Viral / chemistry
  • DNA, Viral / genetics
  • Genes, env*
  • Genetic Variation
  • HTLV-I Infections / epidemiology
  • Human T-lymphotropic virus 1 / classification
  • Human T-lymphotropic virus 1 / genetics*
  • Human T-lymphotropic virus 1 / isolation & purification
  • Humans
  • Japan
  • Molecular Sequence Data
  • Phylogeny*
  • Polymerase Chain Reaction
  • Prevalence
  • Sequence Homology, Nucleic Acid
  • Software
  • Taiwan / epidemiology

Substances

  • DNA Primers
  • DNA, Viral