Evidence for an alpha helical T cell epitope in the C-terminus of the main birch pollen allergen Bet V 1

Biochem Biophys Res Commun. 1996 Jun 5;223(1):187-92. doi: 10.1006/bbrc.1996.0867.

Abstract

Secondary structure prediction of the main birch pollen allergen Bet v 1 was found to be in good agreement with the secondary structural elements found by analysing the Bet v 1 circular dichroism data. According to both experiment and prediction, 32% of 160 amino acids participate in alpha helices, 21% in beta sheets, 24% in turns, and 23% in other structural motifs. The peptide LRAVESYLLAHS which represents one of the major T cell epitopes on Bet v 1 was shown to have a high propensity to form an alpha helix. Time-resolved fluorescence anisotropy measurements of the allergen revealed an overall rotational correlation time of 7.35 ns, which corresponds to a hydrodynamic molecular radius of 19.2 A. This refers to a monomeric Bet v 1 molecule in solution, which is also reflected in the narrow band width of the 1H-NMR spectrum. The results presented here are in good agreement with the recently solved NMR structure of Amb t 5: both allergens are monomers in solution with an extended C-terminal alpha helix containing a major T cell epitope.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allergens*
  • Amino Acid Sequence
  • Antigens, Plant
  • Circular Dichroism
  • Cloning, Molecular
  • Epitopes / analysis*
  • Epitopes / chemistry
  • Fluorescence Polarization
  • Magnetic Resonance Spectroscopy
  • Molecular Sequence Data
  • Plant Proteins / chemistry*
  • Plant Proteins / immunology
  • Protein Structure, Secondary*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / immunology
  • T-Lymphocytes / immunology*
  • Trees

Substances

  • Allergens
  • Antigens, Plant
  • Epitopes
  • Plant Proteins
  • Recombinant Proteins
  • Bet v 1 allergen, Betula