Use of inverse polymerase chain reaction to characterize a novel human herpesvirus 7 isolate

J Virol Methods. 1997 Mar;64(2):197-203. doi: 10.1016/s0166-0934(96)02167-2.

Abstract

Human herpesvirus-7 (HHV-7) is a T-lymphotropic virus detected in peripheral blood mononuclear cells and in saliva, but no reliable link between this agent and a disease has been demonstrated so far. Starting from a 186 bp-fragment described previously, we used an inverse polymerase chain reaction to clone and sequence the adjacent sequences of this known region. A 1062 bp-fragment containing two ORFs was characterized and its sequence was compared with those of two other beta-herpesviruses, human cytomegalovirus (HCMV) and human herpesvirus-6 (HHV-6). With respect to the first ORF, amino-acid identity was estimated to be 22% between HHV-7 and HCMV, and 47% between HHV-7 and HHV-6. In contrast, only a weak homology between HHV-7 and the two other beta-herpesviruses was demonstrated for the second ORF. The newly characterized 1062 bp-fragment was used to define a novel HHV-7-specific PCR assay. Preliminary data indicate that this region is highly conserved among HHV-7 isolates.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • DNA, Viral / analysis
  • Herpesvirus 7, Human / genetics*
  • Herpesvirus 7, Human / isolation & purification
  • Humans
  • Molecular Sequence Data
  • Open Reading Frames
  • Polymerase Chain Reaction / methods*
  • Sequence Homology, Amino Acid

Substances

  • DNA, Viral

Associated data

  • GENBANK/U65005