Synthesis and hybridization properties of inverse oligonucleotides

Nucleic Acids Res. 1997 Aug 1;25(15):3034-41. doi: 10.1093/nar/25.15.3034.

Abstract

The synthesis of adenine and thymine cyclopentylethyl nucleosides is presented. This novel constrained monomeric building block is very difficult to incorporate into oligonucleotides. It was introduced in 13mer oligodeoxynucleotide sequences at a single position using H-phosphonate chemistry. Phosphoramidite chemistry completely failed in this particular case. The H-phosphonate building blocks were obtained starting from the corresponding phosphoramidites. Stability of duplexes with RNA and DNA is significantly reduced.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromosome Inversion*
  • Nucleic Acid Conformation
  • Nucleic Acid Hybridization*
  • Oligonucleotides / chemical synthesis
  • Oligonucleotides / chemistry*
  • Temperature

Substances

  • Oligonucleotides